Talks and posters

List of talks

  • Anastasia Anashkina, Engelhardt Institute of Molecular Biology, Laboratory of computational methods for system biology, Russian Academy of Sciences, Moscow, Russia
    Title: Bioinformatics Basis for the “Molecular Tweezers” Construction
  • Vladik Avetisov, The Semenov Institute of Chemical Physics, RAS Moscow, Russia
    Title: Complex landscapes and ultrametricity in a biological context
  • Vladimir Babenko, Institute of Cytology and Genetics, Novosibirsk, Russia
    Title: Clustering of CpG-rich elements in gene dense regions
  • Milena Banjević, Natera, Department of Statistical Research, San Carlos, California, United States of America
    Title: SNP-Based Noninvasive Prenatal Screening using Cell-Free DNA for Detection of Fetal Chromosome Abnormalities
  • Jan Baumbach, Head of the Computational Biology Group, Dept. of Mathematics and Computer Science (IMADA), University of Southern Denmark (SDU), Denmark
    Title: Computational Breath Analysis – Non-invasive detection of biomarkers in exhaled air and bacterial vapor
  • Bojana Blagojević, Institute of Physics Belgrade, Serbia
    Title: Achieving a rapid expression of toxic (but useful) molecules within cell
  • Erik Bongcam-Rudloff, Division of Molecular Genetics, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Sweden
    Title: Next Generation Biotechnologies, the bad and the good: a look into the future
  • Sanja Brdar, BioSense – Institute for research and development of information technology in biosystem, University of Novi Sad, Serbia
    Title: Non-negative Matrix Factorization for Integrative Clustering of Bioinformatics Data
  • Alexandre de Brevern, University Paris Diderot, Sorbonne Paris Cite, Paris, France
    Title: On flexibility, deformability and mobility of protein structures in the light of a structural alphabet
  • Vladimir Brusić, School of Medicine and Bioinformatics Center, Nazarbayev University, Kazakhstan and Department of Computer Science, Metropolitan College, Boston University, USA
    Title: Elemental metabolomics for improving human health
  • Aleksandr Bugay, Joint Institute for Nuclear Research, Laboratory of Radiation Biology, Moscow, Russia
    Title: Radiation Induced Dysfunctions in the Working Memory Performance Studied by Neural Network Modeling
  • Ralf Bundschuh, The Ohio State University, Department of Physics, Chemistry&Biochemistry, Division of Hematology, USA
    Title: Quantifying genome-wide DNA methylation from MethylCap-Seq data and its applications in cancer
  • Miloš Busarčević, Center of Excellence for Food- and Vector-borne Zoonoses, Institute for Medical Research, University of Belgrade, Serbia, United World College of the Adriatic, Duino, Italy
    Title: Transcriptome data mining results support observed changes in host lipid metabolism during experimental toxoplasmosis
  • Antonio Celani, The Abdus Salam International Centre for Theoretical Physics, Department of Quantitative Life Sciences, Trieste, Italy
    Title: Infomax strategies for an optimal balance of exploration and exploitation
  • Nitesh Chawla, Frank M. Freimann Professor of Computer Science and Engineering, Director Interdisciplinary Center for Network Science and Applications (iCeNSA), Director Data Inference Analytics and Learning Lab (DIAL) University of Notre Dame, USA
    Title: Leveraging Electronic Medical Records for Personalized and Population Healthcare
  • Andrea Ciliberto, IFOM-IEO, Italy
    Title: Adapt or die. Investigating the molecular basis of cell variability
  • Radu Constantinescu, Department of Physics, University of Craiova, Craiova, Romania
    Title: Chaos and symmetry in mathematical neural flow models
  • Miroslava Cuperlovic-Culf, National Research Council of Canada, Department for Information Communication Technologies, Ottawa, Canada
    Title: Genome-scale Modelling, Metabolomics and Cheminformatics analysis guiding the Discovery of Antifungal Metabolites for Crop Protection
  • Tamara Dimitrova, Macedonian Academy of Sciences and Arts, Research Center for Computer Science and Information Technologies, Skopje, Macedonia
    Title: Analysis of network structural characteristics through vertex characteristics in directed networks
  • Branko Dragovich, Institute of Physics, University of Belgrade and Mathematical Institute of the Serbian Academy of Sciences and Arts, Belgrade, Serbia
    Title: Ultrametric Approach to Bioinformation Systems
  • Nataša Đurđevac Conrad, Zuse Institute Berlin, Germany
    Title: A new random-walk-based approach for finding co-expression modules in biological networks
  • Oxana Galzitskaya, Group of bioinformatics, Institute of Protein Research of the RAS, Russia
    Title: Molecular mechanism of Aβ amyloid formation
  • Mikhail Gelfand, A.A. Kharkevich Institute for Information Transmission Problems, RAS, Faculty of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Moscow, Russia
    Title: Epigenetic state and spatial structure of chromatin
  • Milana Grbić, Faculty of Science and Mathematics, Univeristy of Banja Luka, Faculty of Mathematics, University of Belgrade
    Title: Improving 1NN strategy for classification of some prokaryotic organisms
  • Silvia Grigolon, Lincoln’s Inn Fields Laboratory, The Francis Crick Institute, London, United Kingdom
    Title: Identifying relevant positions in proteins by Critical Variable Selection
  • Jelena Guzina, Faculty of Biology, University of Belgrade, Serbia
    Title: Transcription initiation by alternative sigma factors
  • Davorka Jandrlić, Faculty of Mechanical Engineering, Department for Mathematics, University of Belgrade, Serbia
    Title: The influence of amino acids physicochemical propeterties and frequencies on identifying MHC binding ligands
  • Asja Jelić, The Abdus Salam International Centre for Theoretical Physics (ICTP), Department for Quantitative Life Sciences, Trieste, Italy
    Title: Networks of interaction in moving animal groups and collective changes of direction
  • Ana Jelović, Faculty of Transport and Traffic Engineering, Department of General and Applied Mathematics, Univeristy of Belgrade, Serbia
    Title: Filtering of repeat sequences in genomes
  • Ivan Jovanović, VINČA Institute of Nuclear Sciences, University of Belgrade, Department for Radiobiology and Molecular Genetics, Serbia
    Title: Could integrative bioinformatic approach predict the circulating miRs that have significant role in pancreatic tissue in type 2 diabetes?
  • Jovana Kovačević, Faculty of Mathematics, Belgrade University, Department for Computer Science, Serbia
    Title: One structured output learning method for protein function prediction
  • Sergei Kozyrev, Steklov Mathematical Institute, Department of mathematical physics, Moscow, Russia
    Title: Dark states in quantum photosynthesis
  • Urs Lahrmann, Fraunhofer Institute for Toxicology and Experimental Medicine, Project Group Personalized Tumor Therapy, Regensburg, Germany
    Title: Combined genomic and transcriptomic characterization of single disseminated prostate cancer cells
  • Yair Lakretz, Tel-Aviv university, Bar Ilan University ,Israel and SISSA, Italy
    Title: The perceptual structure of the phoneme manifold
  • Noël Malod-Dognin, Imperial College London, Department of Computing
    Title: Patient Specific Network Data Integration Enables Precision Medicine in Cancer
  • Hanen Masmoudi, Higher institute of Biotechnology of Sfax, Tunisia
    Title: Model selection in biomolecular pathways
  • Sofia Medvedeva, Skolkovo Institute of Science and Technology, Skolkovo, Russia
    Title: Dynamics of Escherichia coli type I-E CRISPR spacers over 42,000 years
  • Nikola Milošević, University of Manchester, School of Computer Science, United Kingdom
    Title: Hybrid methodology for information extraction from tables in clinical literature
  • Nataša Mišić, Lola Institute, Belgrade, Serbia
    Title: Standard Genetic Code vs Vertebrate Mitochondrial Code: Nucleon Balances and p-Adic Distances
  • Alexandre Morozov, Rutgers University, USA
    Title: Biophysical models of protein evolutionary dynamics
  • Ozal Mutlu, Marmara University, Faculty of Arts and Sciences, Department for Biology, Istanbul, Turkey
    Title: Structural Characterization of the Trypanosoma brucei CK2A1-HDAC1/HDAC2 Interactions by Molecular Modeling and Protein-Protein Docking
  • Goran Nenadić, School of Computer Science, University of Manchester, Institute of Biotechnology & Health eResearch Centre, Manchester, UK; Mathematical Institute of SASA, Belgrade, Serbia
    Title: What is bioinformatics made from: understanding database and software usage through literature mining
  • Argyris Nicolaidis, Theoretical Physics Department, Aristotle Univertsity of Thessaloniki, Greece
    Title: A Quantum Approach to the DNA Functioning
  • Zoran Obradovic, Member of the Academia Europaea, The Academy of Europe, Foreign Member of the Serbian Academy of Sciences and Arts, L.H. Carnell Professor of Data Analytics, Temple University Director, Center for Data Analytics and Biomedical Informatics, Professor, Computer and Information Sciences Department, Professor, Statistics Department, Fox School of Business
    Title: Effectiveness of Multiple Blood Cleansing Interventions in Sepsis
  • Yuriy L. Orlov, Institute of Cytology and Genetics SB RAS, Novosibirsk State University, Novosibirsk, Russia
    Title: Comparative analysis of plant genome structure and antisense transcripts
  • Vesna Pajić, University of Belgrade, Faculty of Agriculture, Department for Mathematics and Physics, Center for Data Mining and Bioinformatics, Belgrade, Serbia
    Title: Mining PMMoV genotype-pathotype association rules from public databases
  • Paolo Paradisi, Institute of Information Science and Technologies, National Research Council (ISTI – CNR), Department for Signals and Images Laboratory (SI-Lab), Pisa, Italy
    Title: Complexity measures based on intermittent events in brain EEG data
  • Željko Popović, University of Novi Sad, Faculty of Sciences, Department of Biology and Ecology, Serbia
    Title: DORMANCYbase – developing a bioinformatics database on molecular regulation of animal dormancy
  • Nataša Pržulj, Department of Computing, Imperial College London, UK
    Title: Network Data Integration Enables Precision Medicine
  • Marco Punta, Centre for Evolution and Cancer, The Institute of Cancer Research, London, UK
    Title: Intrinsically disordered protein families
  • Andjela Rodić, University of Belgrade, Faculty of Biology, Serbia
    Title: Examining regulation of restriction-modification systems by quantitative modeling
  • Richard Roettger, Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark
    Title: On the clustering of biomedical datasets – a data-driven perspective
  • Konstantin Severinov, Waksman Institute of Microbiology, Rutgers, the State University of New Jersey, USA,
    Skolkovo Institute of Science and Technology, Skolkovo, Russia
    Title: The Influence of Copy-Number Maintenance Mechanisms of Targeted Extrachromosomal Genetic Elements on the Outcome of CRISPR-Cas Defense
  • Ana Simonović, Institute for Biological Research “Siniša Stanković”, Belgrade, Serbia
    Title: Identification of genes involved in morphogenesis in vitro in Centaurium erythraea Rafn. as a model organism
  • Paul Sorba, Laboratory of Theoretical Physics and CNRS, Annecy, France
    Title: Symmetry and Minimum Principle: a basis for the Genetic Code ?
  • Ana Stanojević, University of Belgrade, Faculty of Physical Chemistry, Serbia
    Title: Mathematical Modeling of the Hypothalamic-Pituitary-Adrenal Axis Dynamics in Rats
  • Aleksandar Stojmirovic, Janssen R & D, LLC, Systems Pharmacology & Biomarkers, Immunology TA, USA
    Title: Networks of Co-expression Modules
  • Balázs Szalkai, Eötvös University, Budapest
    Title: Graph Theoretical Analysis Reveals: Women’s Brains Are Better Connected than Men’s
  • Bosiljka Tadić, Department of Theoretical Physics, Jozef Stefan Institute, Ljubljana, Slovenia
    Title: Algebraic Topology Analysis of Brain Graphs Emanating from Social Communications
  • Peter Tompa, VIB Department of Structural Biology Vrije Universiteit Brussel
    Title: The role of structural disorder in protein degradation
  • Silvio Tosatto, Department of Biomedical Sciences,
    University of Padova, Italy
    Title: Non-globular proteins: Towards an understanding of the “dark matter” in the protein universe
  • Vladimir Uversky, Department of Molecular Medicine University of South Florida
    Title: Intrinsically disordered proteins in salted water and in the thick soup
  • Petar Veličković, University of Cambridge, Faculty of Computer Science and Technology, Cambridge, United Kingdom
    Title: Viral: Real-world competing process simulations on multiplex networks
  • Nevena Veljković, Institute for Nuclear Sciences VINCA, University of Belgrade, Serbia
    Title: Transcription factors interaction inference based on sequence feature representations
  • Jose Vilar, University of the Basque Country, Spain
    Title: Computational systems biophysics of cellular processes in health and disease
  • Sergey N. Volkov, Bogolyubov Institute for Theoretical Physics, NAS of Ukraine
    Title: DNA polymorphism as a tool for genetic information implementation
  • Igor Volovich, Department of Mathematical Physics, Steklov Mathematical Institute, RAS, Moscow, Russia
    Title: Holographic description of quantum mutual information in photosynthesis
  • Milan Vukičević, University of Belgrade, Faculty of Organizational Sciences, Serbia
    Title: White-Box Predictive Algorithms for Predicting Disease States on Gene Expression Data – From Component Based Design to Meta Learning
  • Robert Waterhouse, Department of Genetic Medicine and Development, Medical School, University of Geneva, Swiss Institute of Bioinformatics, Switzerland
    Title: OrthoDB: an evolutionary perspective to terpreting genomics data
  • Ioannis Xenarios, SIB Swiss Institute of Bioinformatics, Switzerland
    Title: From biocuration to model predictions and back

List of posters

  • Olivia Ana Florea, Faculty of Mathematics and Computer Science, Transilvania University of Brasov, Romania
    Title: A numerical analysis for computing pressure drop mildly stenosed arteries
  • Jelena Graovac, Faculty of Mathematics, Department of Computer Science, University of Belgrade, Serbia
    Title: Machine learning-based approach to help diagnosing Alzheimer’s disease through spontaneous speech analysis
  • Polina Kanevska, Bogolyubov Institute for Theoretical Physics, Kyiv, Ukraine
    Title: Mechanism of unusual flexibility of DNA TATA-box
  • Jelena Kušić-Tišma, Institute of Molecular Genetics and Genetic Engineering, Laboratory for Molecular Biology, Belgrade, Serbia
    Title: Targeted resequencing in diagnostics of inherited genetic disorders
  • Yair Lakretz, Tel-Aviv university, Israel
    Title: A biologically-inspired model of visual word recognition
  • Filis Morina, Institute for Multidisciplinary Research, Department of Life Sciences, University of Belgrade, Serbia
    Title: De Novo Transcriptome Sequencing of Verbascum thapsus L. to Identify Genes Involved in Metal Tolerance
  • Filis Morina, Institute for Multidisciplinary Research, Department of Life Sciences, University of Belgrade, Serbia
    Title: De Novo Transcriptome Sequencing of Pelargonium zonale L. to Identify Genes Involved in UV-B and High Light Response
  • Ozal Mutlu, Marmara University, Faculty of Arts and Sciences, Department for Biology, Istanbul, Turkey
    Title: Protein Interaction Network Construction and Analysis Using the Quantitative Proteomics Data
  • Miloš Nikolić, Faculty of Biology, University of Belgrade, Serbia
    Title: Contribution of bacterial promoter elements to transcription start site detection accuracy
  • Ivana Perić, Vinča Institute of Nuclear Sciences, Laboratory of Molecular Biology and Endocrinology, Belgrade, Serbia
    Title: Chronic Treatment with Fluoxetine Led to Alterations in the Rat Hippocampal Proteome
  • Vladimir Perović, Centre for Multidisciplinary Research, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia
    Title: A web-based tool for prediction of effects of single amino acid substitutions outside conserved functional protein domains
  • Vladimir Perović, Centre for Multidisciplinary Research, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia
    Title: Protein-protein interaction prediction method based on principle component analysis of amino acid physicochemical properties
  • Bojan Petrović, Faculty of Technology and Metallurgy, Department for Biochemical Engineering and Biotechnology, University of Belgrade, Serbia
    Title: Basic Sequence Alignment Based Screening for Alternative Mannanase Producing Bacteria
  • Tamara Stanković, Institute of Physiology and Biochemistry, Faculty of Biology, University of Belgrade, Serbia
    Title: Search for small RNAs associated with CRISPR/Cas
  • Ivana Stanković, Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Serbia
    Title: Construction of Amyloid PDB Files Database
  • Ruth Stoney, University of Manchester, United Kingdom
    Title: A novel approach for dealing with spatial/temporal edges within molecular interaction networks.
  • Aleksandra Uzelac, Institute for Medical Research, Center of Excellence for Food- and Vector-borne Zoonoses, Department for Parasitology, Belgrade, Serbia
    Title: Gene expression in schizophrenia patients and non-schizophrenic individuals infected with Toxoplasma gondii
  • Milica Zlatković, University of Belgrade-Faculty of Forestry, Belgrade, Serbia
    Title: Botryosphaeriaceae on Aesculus hippocastanum in Serbia
  • Milica Zlatković, University of Belgrade-Faculty of Forestry, Belgrade, Serbia
    Title: Botryosphaeriaceae on Sequoia sempervirens in Serbia